Publications

Funded Research

Pre-prints

Beaudry, M. S., J. C. Frederick, M. E. J. Lott, W. A. Norfolk, T. C. Glenn, and E. K. Lipp. 2021. Effectiveness of an ozone disinfecting and sanitizing cabinet to decontaminate a surrogate virus for SARS-CoV-2 on N-95 masks. preprint available at medRxiv: https://www.medrxiv.org/content/10.1101/2020.11.04.20226233v1

PUBLICATIONS (numbered chronologically in each category – Articles, Notes, Books, etc.)

19,402 citations, h-index = 58, i10-index = 176 at Google Scholar, as of 10/7/2024

For updated citation count, see: http://scholar.google.com/citations?hl=en&user=UdTPdOUAAAAJ

ORCID: https://orcid.org/0000-0001-7725-3637

postdoctoral, graduate student and undergraduate or high school student authors are indicated; status during research (not time of publication)

Peer-reviewed Articles (Notes and other publication categories are numbered & listed separately):

Manuscripts submitted and available as preprints (in review for publication):

Peer-reviewed Articles

172. Ronai, I., J. C. Frederick, A. T. Thompson, P. Sharma, M. J. Yabsley, U. Pal, C. G. Extavour, and T. C. Glenn. 2024. Duplex PCR assay to determine sex and mating status of Ixodes scapularis (Acari: Ixodidae), vector of the Lyme disease pathogen. Submitted to J. Med. Entomol. bioRxiv doi: https://doi.org/10.1101/2024.10.23.619921

171. Ronai, I., Baptista, R. de P., Paulat, N. S., Frederick, J. C., Azagi, T., Bakker, J. W., Dillon, K. C., Sprong, H., Ray, D. A., and T. C. Glenn. 2024. The repetitive genome of the Ixodes ricinus tick reveals transposable elements have driven genome evolution in ticks. bioRxiv doi: https://doi.org/10.1101/2024.03.13.584159

170. Collier, K. A., T. C. Glenn, N. Takebayashi, M. Hickerson, and K. Winker. 2024. Mitogenomes reveal the timing and distribution of divergence events among trans-Beringian birds. Submitted to PeerJ.

169. Dadzie, F. A., M. S. Beaudry, A. Deyanov, H. Slanis, M. Q. Duong, R. Turner, A. Khan, C. A. Arias, J. C. Kissinger, T. C. Glenn, and R. de Paula Baptista. 2024. Evaluating the benefits and limits of multiple displacement amplification with whole-genome Oxford Nanopore sequencing. bioRxiv https://doi.org/10.1101/2024.02.09.579537

168. Penumarthi, L. R., R. P. Baptista, M. S. Beaudry, T. C. Glenn, and J. C. Kissinger. 2024. A new chromosome-level genome assembly and annotation of Cryptosporidium meleagridis. bioRxiv doi: https://doi.org/10.1101/2024.02.16.580748

167. de Paula Baptista, R., R. Xiao, Y. Li, T. C. Glenn and J. C. Kissinger. 2024. New T2T assembly of Cryptosporidium parvum IOWA annotated with reference genome gene identifiers. bioRxiv doi: 10.1101/2023.06.13.544219 PMID: 37398184

Manuscripts Accepted, In Press, or On-line Early

166. Braun, E. L., C. H. Oliveros, N. D. White Carreiro, M. Zhao, T. C. Glenn, R. T. Brumfield, M. J. Braun, R. T. Kimball, and B. C. Faircloth. 2024. Testing the mettle of METAL: A comparison of phylogenomic methods using a challenging but well-resolved phylogeny. Bulletin of the Society of Systematic Biologists (accepted pending revisions). bioRxiv doi: https://doi.org/10.1101/2024.02.28.582627

165. Beaudry, M.S., M. I. Bhuiyan, and T. C. Glenn. 2024. Enriching the future of Public Health microbiology with hybridization bait capture. Clinical Microbiology Reviews - accepted.

Publications In Print (or final on-line version is available for on-line only publications)

164. Kolli, R. T., T. C. Glenn, R. B. Bringolf, M. Henderson, B. S. Cummings, and J. F. Kenneke. 2024. Changes in CpG-methylation of the vitellogenin 1 promoter in adult male zebrafish after exposure to 17α-ethynylestradiol. Environmental Toxicology and Chemistry 43(7):1547-1556. https://doi.org/10.1002/etc.5879

163. Pierson, T.W., K. H. Kozak, T. C. Glenn, and B. M. Fitzpatrick. 2024. River drainage reorganization and reticulate evolution in the two-lined salamander (Eurycea bislineata) species complex. Systematic Biology 73(1):26-35. https://doi.org/10.1093/sysbio/syad064

162. Kim, J.S., K. C. Williams, R. A. Kirkland, R. Schade, K. G. Freeman, C. R. Cawthon, A. W. Rautmann, J. M. Smith, G. L. Edwards, T. C. Glenn, P. V. Holmes, G. de Lartigue, C. B. de La Serre. 2023. The gut-brain axis mediates bacterial driven modulation of reward signaling. Molecular Metabolism 75:101764. https://doi.org/10.1016/j.molmet.2023.101764

161. Ostezan, A., E. M. Prenger, L. Rosso, B. Zhang, R. M. Stupar, T. Glenn, M.A. R. Mian, and Z. Li. A chromosome 16 deletion conferring a high sucrose phenotype in soybean. 2023. Theoretical and Applied Genetics. 136 (5):109

160. Frederick, J. C., A. T. Thompson, P. Sharma, G. Dharmarajan, I. Ronai, R. Pesapane, R. C. Smith, K. D. Sundstrom, J. I. Tsao, H. C. Tuten, M. J. Yabsley, and T. C. Glenn. 2023. Phylogeography of the blacklegged tick Ixodes scapularis throughout the United States identifies candidate loci for differences in vectorial capacity. Molecular Ecology 32:3133-3149. https://doi.org/10.1111/mec.16921 PMID: 36912202

159. Spaulding, F., J. F. McLaughlin, K. G. McCracken, T. C. Glenn, K. Winker. 2023. Population genomics indicate three different modes of divergence and speciation with gene flow in the green-winged teal duck complex. Molecular Phylogenetics and Evolution 182:107733. https://doi.org/10.1016/j.ympev.2023.107733

158. De, S., S. B. Kingan, C. Kitsou, D. M. Porti, S. D. Foor, J. C. Frederick, V. S. Rana, N. S. Paulat, D. A. Ray, Y. Wang, T. C. Glenn, and U. Pal. 2023. A high-quality Ixodes scapularis genome advances tick science. Nature Genetics 55:301-311. online Jan. 2023. doi: 10.1038/s41588-022-01275-w

157. Ribeiro, J. M. C., N. J. Bayona-Vásquez, K. Budachetri, D. Kumar, J. C. Frederick, F. Tahir, B. C. Faircloth, T. C. Glenn, and S. Karim. 2023. A draft genome of the Gulf Coast tick, Amblyomma maculatum. Ticks and Tick-borne Diseases 14 (2): 102090, online Nov. 2022; doi: 10.1016/j.ttbdis.2022.102090

156. Moore, L. A., J. W. Finger, D. L. Haskins, R. M. Elsey, S. B. Castleberry, T. C. Glenn, C. H. Jagoe, and I. L. Brisbin. 2022. Tissue distribution of mercury in the bodies of wild American alligators (Alligator mississippiensis) from a coastal marsh in Louisiana (USA). Archives of Environmental Contamination and Toxicology 83:13–20.

155. Spaulding, F., J. F. McLaughlin, T. C. Glenn, K. Winker. 2022. Estimating movement rates between Eurasian and North American birds that are vectors of avian influenza (AI). Avian Diseases 66(2):1-10. http://doi.org/10.1637/aviandiseases-d-21-00088 PMID:35510470

154. Durso, A. M., T. J. Kieran, T. C. Glenn, and S. J. Mullin. 2022. Comparison of three methods for measuring dietary composition of plains hog-nosed snakes. Herpetologica 78(2):119-132. doi: 10.1655/HERPETOLOGICA-D-21-00023

153. Beaudry, M. S., J. C. Thomas, R. Baptista, A. Sullivan, W. Norfolk, A. Devault, J. Enk, T. J. Kieran, O. Rhodes, A. Perry, L. Rose, N. J. Bayona-Vásquez, A. Oladeinde, E. Lipp, S. Sanchez, T. C. Glenn. 2021. Escaping the fate of Sisyphus: Assessing resistome hybridization baits for antimicrobial resistance gene capture. Environmental Microbiology 23(12):7523-7537. doi 10.1111/1462-2920.15767 [bioRxiv: 10.1101/2021.07.20.452950v1] PMID: 34519156

152. Thomas, J. C. IV, T. J. Kieran, J. W. Finger Jr., N. J. Bayona-Vásquez, A. Oladeinde, J. Beasley, J. C. Seaman, J V. McArthur, O. E. Rhodes Jr., and T. C. Glenn. 2021. Unveiling the gut microbiota and resistome of wild cotton-mice, Peromyscus gossypinus, from heavy metal and radionuclide-contaminated sites in the Southeastern US. mSphere 9(1): e00097-21. doi: 10.1128/Spectrum.00097-21 PMID: 34431703

151. Kieran, T. J., E. R. L. Gordon, A. Z. Riveron, C. N. Ibarra-Cerdena, T. C. Glenn, and C. Weirauch. 2021. Ultraconserved elements reconstruct the evolution of Chagas disease-vectoring kissing bugs (Reduviidae: Triatominae). Systematic Entomology 46(3):725-740. doi: 10.1111/syen.12485

150. Beaudry, M. S., J. Wang, T. J. Kieran, J. Thomas, N. J. Bayona-Vásquez, B. Gao, A. Devault, B. Brunelle, K. Lu, J.-S. Wang, O. E. Rhodes, Jr., and T. C. Glenn. 2021. Improved microbial community characterization of 16S rRNA via metagenome hybridization capture enrichment. Frontiers in Microbiology 12:644662. doi: 10.3398/fmicb.2021.644662. PMID: 33986735

149. Kolchanova S., A. Komissarov, S. Kliver, A. Mazo-Vargas, Y. Afanador, J. Velez-Valentín, R. V. de la Rosa, S. Castro-Marquez, I. Rivera-Colon, A. J. Majeske, W. W. Wolfsberger, T. Hains, A. Corvelo, J.-C. Martinez-Cruzado, T. C. Glenn, O. Robinson, K.-P. Koepfli, and T. K. Oleksyk. 2021. Molecular phylogeny and evolution of Amazon parrots in the Greater Antilles. Genes 12(4):608. doi: 10.3390/genes12040608

148. Louha, S., R. Meinersmann, and T. Glenn. 2021. Whole genome genetic variation and linkage disequilibrium in a diverse collection of Listeria monocytogenes isolates. Plos One 16(2):e0242297. doi: 10.1371/journal.pone.0242297

147. Louha, S., R. Meinersmann, Z. Abdo, M. Berrang, and T. Glenn. 2020. An open-source program (Haplo-ST) for whole-genome sequence typing shows extensive diversity of Listeria monocytogenes in outdoor environments and poultry processing plants. Applied and Environmental Microbiology. 87:e02248-20. doi: 10.1128/AEM.02248-20

146. Calderón, J. M., D. Erazo, T. J. Kieran, N. L. Gottdenker, C. León, J. Cordovez, F. Guhl, T. C. Glenn, C. González. 2020. How microclimatic variables and blood meal sources influence Rhodnius prolixus abundance and Trypanosoma cruzi infection in Attalea butyracea and Elaeis guineensis palms. Acta Tropica 212: 105674. doi: 10.1016/j.actatropica.2020.105674.

145. Kieran, T. J., S. J. Goodman, J. W. Finger Jr., J. C. Thomas, M. T. Hamilton, T. D. Tuberville, and T. C. Glenn. 2020. Microbiota of four tissue types in American alligators (Alligator mississippiensis) following extended dietary selenomethionine exposure. Bulletin of Environmental Contamination and Toxicology 105(3): 381-386. doi: 10.1007/s00128-020-02961-3.

144. McLaughlin, J. F., B. C. Faircloth, T. C. Glenn, and K. Winker. 2020. Divergence, gene flow, and speciation in eight lineages of trans-Beringian birds. Molecular Ecology 29(18): 3526-3542. doi: 10.1111/mec.15574.

143. Whitby, M. D., T. J. Kieran, T. C. Glenn, and C. Allen. 2020. Agricultural pests consumed by common bat species in the United State corn belt: the importance of DNA primer choice. Agriculture, Ecosystems and Environment 303: 107105. doi: 10.1016/j.agee.2020.107105.

142. Díaz-Jaimes, P., N. Bayona-Vásquez, E. Escatel-Luna, M. Uribe-Alcocer, C. Pecoraro, B. Frazier, T. Glenn, and M. Babucci. 2020. Population genetic divergence of Bonnethead sharks Sphyrna tiburo in the western North Atlantic: implications for conservation. Aquatic Conservation: Marine and Freshwater Ecosystems 31(1):83-98. doi: 10.1002/aqc.3434.

141. Rhodes, O. E. Jr., F. Bréchignac, C. Bradshaw, T. G. Hinton, C. Mothersill, J.A. Arnone III, D. P. Aubrey, L. W. Barnthouse, J. C. Beasley, A. B. Alquati, L. R. Boring, A. L. Bryan, K. A. Capps, B. Clément, A. Coleman, C. Condon, F. Coutelot, T. DeVol, G. Dharmarajan, D. Fletcher, W. Flynn, G. Gladfelder, T. C. Glenn, S. Hendricks, E. Hobbie, K. Ishida, T. Jannik, L. Kapustka, U. Kautsky, R. Kennamer, W. Kuhne, S. Lance, G. Laptyev, C. Love, L. Manglass, N. Martinez, T. Mathews, A. McKee, W. McShea, S. Mihok, G. Mills, B. Parrott, B. Powell, E. Pryakhin, A. Rypstra, D. Scott, J. Seaman, C. Seymour, M. Shkvyria, A. Towns, A. Ward, D. White, M. Wood, and J. Zimmerman. 2020. Integration of ecosystem science into radioecology: A consensus perspective. Science of the Total Environment 740:140031

140. Kieran, T. J., N. Bayona-Vásquez, C. P. Varian, A. Saldaña, F. Samudio, J. E. Calzada, N. L. Gottdenker, and T. C. Glenn. 2020. Population genetics of two chromatic morphs of the Chagas disease vector Rhodnius pallescens Barber, 1932 in Panamá. Infection, Genetics and Evolution 84:104369. doi: 10.1016/j.meegid.2020.104369.

139. Ghosh, A., R. N. Platt, M. Vandewege, R. Tabbasum, C.-Y. Hsu, S. Isberg, D. Peterson, J. W. Finger Jr., T. J. Kieran, T. C. Glenn, J. Gongora, and D. A. Ray. 2020. Identification and characterization of microRNAs (miRNAs) and their transposable element origins in the saltwater crocodile, Crocodylus porosus. Analytical Biochemistry 602: 113781. doi: 10.1016/j.ab.2020.113781. PMID:32485163

138. Thomas, J. C. IV, A. Oladeinde, T. J. Kieran, J. W. Finger Jr., N. J. Bayona-Vasquez, J. C. Cartee, J. C. Beasley, J. C. Seaman, J. V. McArthur, O. E. Rhodes Jr., and T. C. Glenn. 2020. Co-occurrence of antibiotic, biocide, and heavy metal resistance genes in bacteria from metal and radionuclide contaminated soils at the Savannah River Site. Microbial Biotechnology 13(4):1179-1200. doi: 10.1111/1751-7915.13578 PMID:32363769

137. Lourenco, J. M., T. J. Kieran, D. S. Seidel, T. C. Glenn, M. F. da Silveira, T. R. Callaway, and R. L. Stewart. 2020. Comparison of the ruminal and fecal microbiotas in beef calves supplemented or not with concentrate. PLOS ONE, 15(4): e0231533. doi:10.1371/journal.pone.0231533

136. Louha, S., D. A. Ray, K. Winker and T. C. Glenn. 2020. A high-quality genome assembly of the North American Song Sparrow, Melospiza melodia. G3 10(4):1159-1166. doi: 10.1534/g3.119.400929. PMID: 32075855

135. Caballero, J. R. I., J. P. Ata, K.A. Leddy, T. C. Glenn, T. J. Kieran, N. B. Klopfenstein, M.-S. Kim, and J. E. Stewart. 2020. Genome comparison and transcriptome analysis of the invasive brown root rot pathogen, Phellinus noxius, from different geographic regions reveals potential enzymes associated with degradation of different wood substrates. Fungal Biology 124(2):144-154. doi: 10.1016/j.funbio.2019.12.007 PMID:32008755

134. Ghosh, A., M. G. Johnson, A. B. Osmanski, S. Louha, N. J. Bayona-Vásquez, T. C. Glenn, J. Gongora, R. E. Green, S. Isberg, R. D. Stephens, and D. A. Ray. 2020. A high-quality reference genome assembly of the saltwater crocodile, Crocodylus porosus, reveals patterns of selection in Crocodylidae. Genome Biology and Evolution 12(1):3635-3646. doi:10.1093/gbe/evz269. PMID: 31821505

133. Kieran, T. J., K. M. H. Arnold, J. C. Thomas IV, C. P. Varian, A. Saldaña, J. E. Calzada, T. C. Glenn, and N. L. Gottdenker. 2019. Regional biogeography of microbiota composition in the Chagas disease vector Rhodnius pallescens. Parasites & Vectors 12(1):504. doi: 10.1186/s13071-019-3761-8. PMID: 31665056

132. Oladeinde, A., K. Cook, S. Lakin, R. Woyda, Z. Abdo, T. Looft, K. Herrington, G. Zock, J. Lawrence, J. Thomas, M. Beaudry, and T. Glenn. 2019. Horizontal gene transfer and acquired antibiotic resistance in S. Heidelberg following in vitro incubation in broiler ceca. Applied and Environmental Microbiology 85(22):e01903-19. DOI: 10.1128/AEM.01903-19 PMID: 31471306.

131. Prenger, E. M., A. Ostezan, M. A. R. Mian, R. M. Stupar, T. Glenn, Z. Li. 2019. Identification and characterization of a fast-neutron-induced mutant with elevated seed protein content in soybean. Theoretical and Applied Genetics 132(11): 2965-2983. https://doi.org/10.1007/s00122-019-03399-w

130. Bayona- Vásquez*, N. J., T. C. Glenn*, T. J. Kieran, T. W. Pierson, S. L. Hoffberg, P. A. Scott, K. E. Bentley, J. W. Finger, S. Louha, N. Troendle, P. Diaz-Jaimes, R. Mauricio, B. C. Faircloth. 2019. Adapterama III: Quadruple-indexed, double/triple-enzyme RADseq libraries (2RAD/3RAD). PeerJ 7:e7724. http://doi.org/10.7717/peerj.7724 PMID: 31616583; cited preprint available at: https://doi.org/10.1101/205799 *equal co-authorship

129. Glenn, T. C., T. W. Pierson, N. J. Bayona-Vásquez, T. J. Kieran, S. L. Hoffberg, J. C. Thomas IV, D. E. Lefever, J. W. Finger Jr., B. Gao, X. Bian, S. Louha, R. T. Kolli, K. Bentley, J. Rushmore, K. Wong, T. I. Shaw, M. J. Rothrock Jr., A. M. McKee, T. L. Guo, R. Mauricio, M. Molina, B. S. Cummings, L. H. Lash, K. Lu, G. S. Gilbert, S. P. Hubbell, and B. C. Faircloth. 2019. Adapterama II: Universal amplicon sequencing on Illumina platforms (TaggiMatrix). PeerJ 7:e7786. http://doi.org/10.7717/peerj.7786 PMID: 31616589; cited preprint available at: https://doi.org/10.1101/619544

128. Glenn, T. C., R. Nilsen, T. J. Kieran, J. G. Sanders, N. J. Bayona-Vasquez, J. W. Finger Jr., T. W. Pierson, K. E. Bentley, S. L. Hoffberg, S. Louha, F. J. García-De León, M. A. D. R. Portilla, K. D. Reed, J. L. Anderson, J. K. Meece, S. E. Aggrey, R. Rekaya, M. Alabady, M. Bélanger, K. Winker, and B. C. Faircloth. 2019. Adapterama I: Universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext). PeerJ 7:e7755. http://doi.org/10.7717/peerj.7755 PMID: 31616586; cited preprint available at: https://doi.org/10.1101/049114

127. Wamucho A, Unrine JM, Kieran TJ, Glenn TC, Schultz CL, Farman M, Svendsen C, Spurgeon DJ, Tsyusko OV. 2019. Genomic mutations after multigenerational exposure of Caenorhabditis elegans to pristine and sulfidized silver nanoparticles. Environmental Pollution 254(Pt B):113078. doi: 10.1016/j.envpol.2019.113078. Epub 2019 Aug 24. PMID: 31479814

126. Winker, K., T. C. Glenn, J. Withrow, S. G. Sealy, and B. C. Faircloth. 2019. Speciation despite gene flow in two owls (Aegolius ssp.): Evidence from 2,517 ultraconserved element (UCE) loci. The Auk: Ornithological Advances. 136 (2): 1 April 2019, ukz012. https://doi.org/10.1093/auk/ukz012

125. Erazo, D., N. L. Gottdenker, C. González, F. Guhl, M. Cuellar, T. J. Kieran, T. C. Glenn, J. D. Umeña, and J. Cordovez. 2019. Generalist host species drive Trypanosoma cruzi vector infection in oil palm plantations in the Orinoco region, Colombia. Parasites & Vectors 12:274. https://doi.org/10.1186/s13071-019-3519-3 PMID: 31138275

124. Lourenco, J.M., T. R. Callaway, T. Kieran, T. C. Glenn, J. C. McCann, R. L. Stewart, Jr. 2019. Analysis of the rumen microbiota of beef calves supplemented during the suckling phase. Frontiers in Microbiology. https://doi.org/10.3389/fmicrob.2019.01131 PMID:31191476

123. Finger, J. W. Jr., M. T. Hamilton, M. D. Kelley, N. Stacey, T. C. Glenn, and T. D. Tuberville. 2019. Examining the effects of chronic selenium exposure on traditionally used stress parameters in juvenile American alligators (Alligator mississippiensis). Archives of Environmental Contamination and Toxicology. 77 (1):14-21. PMID:30976886

122. Kolli, R. T., T. C. Glenn, B. T. Brown, S. P. Kaur, L. M. Barnett, L. H. Lash, and B. S. Cummings. 2019. Bromate-induced changes in p21 DNA methylation and histone acetylation in renal cells. Toxicological Sciences 168(2): 460-473. PMID:30649504

121. Oliveros, C. H., D. J. Field, D. T. Ksepka, F. K. Barker, A. Aleixo, M. J. Andersen, P. Alström, B. W. Benz, E. L. Braun, M. Braun, G. A. Bravo, R. Brumfield, R. T. Chesser, S. Claramunt, J. Cracraft, A. M. Cuervo, E. P. Derryberry, T. C. Glenn, M. G Harvey, P. A. Hosner, L. Joseph, R. T. Kimball, A. L. Mack, C. M. Miskelly, A. T. Peterson, M. B. Robbins, F. H. Sheldon, L. F. Silveira, B. T. Smith, N. D. White, R. G. Moyle, and B. C. Faircloth. 2019. Earth history and the passerine superradiation. Proceedings of the National Academy of Sciences, USA. 116(16):7916-7925. https://doi.org/10.1073/pnas.1813206116 PMID: 30936315

120. Scott, P. A., T. C. Glenn, and L. J. Rissler. 2019. Formation of a recent hybrid zone offers insight into the geographic puzzle and maintenance of species boundaries in musk turtles. Molecular Ecology 28(4):761-771. https://doi.org/10.1111/mec.14983. PMID: 30578692

119. Kieran, T. J., E. R. L. Gordon, M. Forthman, R. Hoey-Chamberlain, R. T. Kimball, B. C. Faircloth, C. Weirauch, and T. C. Glenn. 2019. Insight from an ultraconserved element bait set designed for hemipteran phylogenetics integrated with genomic resources. Molecular Phylogeny and Evolution 130:297-303. https://doi.org/10.1016/j.ympev.2018.10.026 PMID: 30359745

118. Hoffberg, S. L., N. J. Troendle, T. C. Glenn, O. Mahmud, S. Louha, D. Chalopin, J. L. Bennetzen, and R. Mauricio. 2018. A high-quality reference genome for the invasive mosquitofish Gambusia affinis using a Chicago library. G3: Genes, Genomes, Genetics 8(6): 1855-1861. https://doi.org/10.1543/g3.118.200101

117. Winker, K., T. C. Glenn, and B. C. Faircloth. 2018. Ultraconserved elements (UCEs) illuminate the population genomics of a recent, high-latitude avian speciation event. PeerJ 6:e5735. https://doi.org/10.7717/peerj.5735

116. Kanine, J. M., E. M. Kierepka, S. B. Castleberry, M. T. Mengak, N. P. Nibbelink and T. C. Glenn. (2018). Influence of landscape heterogeneity on the functional connectivity of Allegheny Woodrats (Neotoma magister) in Virginia. Conservation Genetics 19(5):1259-1268. doi: 10.1007/s10592-018-1093-4

115. Finger, J. W. Jr., M. T. Hamilton, M. D. Kelley, Y. Zhang, A. N. Kavazis, T. C. Glenn, and T. D. Tuberville. 2018. Dietary selenomethionine administration and its effects on the American alligator (Alligator mississippiensis): oxidative status and corticosterone levels. Archives of Environmental Contamination and Toxicology 75(1):37-44. https://doi.org/10.1007/s00244-018-0530-1

114. Oladiende, A., E. Lipp C.-Y. Chen, R. Muirhead, T. Glenn, K. Cook, and M. Molina. 2018. Transcriptome changes of Escherichia coli, Enterococcus faecalis, and Escherichia coli O157:H7 laboratory strains in response to photo-degraded DOM. Frontiers in Microbiology 9:882 (doi: 10.3389/fmicb.2018.00882)

113. Scott, P. A., T. C. Glenn, and L. J. Rissler. 2018. Resolving taxonomic turbulence and uncovering cryptic diversity in the musk turtles (Sternotherus) using robust demographic modeling. Molecular Phylogenetics and Evolution 120:1-15. [published on-line 2017, doi: 10.1016/j.ympev.2017.11.008]

112. Platt, R. N. II, B. C. Faircloth, K. A. M. Sullivan, T. J. Kieran, T. C. Glenn, M. W. Vandewege, T. E. Lee Jr., R. J. Baker, R. D. Stevens, and D. A. Ray. 2018. Conflicting evolutionary histories of mitochondrial and nuclear genomes in New World Myotis bats. Systematic Biology 67(2):236-249. https://doi.org/10.1093/sysbio/syx070 PMID: 28945862

111. Wang, J., L. Tang, H. Zhou, J. Zhou, T. C. Glenn, C.-L. Shen, J.-S. Wang. 2018. Long-term treatment with green tea polyphenols modifies the gut microbiome of female sprague-dawley rats. Journal of Nutritional Biochemistry 56:55-64.

110. Warren WC, Kuderna L, Alexander A, Catchen J, Pérez-Silva JG, López-Otín C, Quesada V, Minx P, Tomlinson C, Montague MJ, Farias FHG, Walter RB, Marques-Bonet T, Glenn T, Kieran TJ, Wise SS, Wise JP Jr, Waterhouse RM, Wise JP Sr. 2017. The novel evolution of the sperm whale genome. Genome Biology and Evolution 9(12):3260-3264. doi: 10.1093/gbe/evx187. PMID: 28985367.

109. Kieran T.J., N.L. Gottdenker. P. Varian, A. Saldaña, N. Means, D. Owens, J.E. Calzada, and T.C. Glenn. 2017. Blood meal source characterization using Illumina sequencing in the Chagas disease vector Rhodnius pallescens (Hemiptera: Reduviidae) in Panama. Journal of Medical Entomology 54(6):1786-1789. doi: 10.1093/jme/tjx170. PMID: 29029145

108. Huang G, Xu J, Lefever DE, Glenn TC, Nagy T, Guo TL. 2017. Genistein prevention of hyperglycemia and improvement of glucose tolerance in adult non-obese diabetic mice are associated with alterations of gut microbiome and immune homeostasis. Toxicology and Applied Pharmacology 332:138-148. doi: 10.1016/j.taap.2017.04.009. PMID: 28412308

107. McKee, A. M., J. C. Maerz, L. L. Smith, and T. C. Glenn. 2017. Habitat predictors of genetic diversity for two sympatric wetland-breeding amphibian species. Ecology and Evolution 7(16):6271-6283, doi: 10.1002/ece3.3203 PMID: 28861231

106. Croshaw, D., J. Pechmann, and T.C. Glenn. 2017. Multiple paternity benefits female marbled salamanders by increasing survival of progeny to metamorphosis. Ethology 123:307-315. doi: 10.1111/eth.12597

105. Finger, J.W., M.T. Hamilton, T.C. Glenn, and T.D. Tuberville. 2017. Dietary selenomethionine administration in the American alligator (Alligator mississippiensis): hepatic and renal Se accumulation and its effects on growth and body condition. Archives of Environmental Contamination and Toxicology 72(3):439-448. doi 10.1007/s00244-017-0370-4. PMID: 28150020

104. Gilbert, G.S., J. O. Ballesteros, C. A. Barrios-Rodriguez, E. F. Bonadies, M. L. Cedeño-Sánchez, N. J. Fossatti-Caballero, M. M. Trejos-Rodríguez, J. M. Pérez-Suñiga, K. S. Holub-Young, L. A.W. Henn, J. B. Thompson, C. G. García-López, A. C. Romo, D. C. Johnston, P. P. Barrick, F. A. Jordan, S. Hershcovich, N. Russo, J. D. Sánchez, J. P. Fábrega, R. Lumpkin, H. A. McWilliams, K. N. Chester, A. C. Burgos, E. B. Wong, J. H. Diab, S. A Renteria, J. T. Harrower, D. A. Hooton, T. C. Glenn, B. C. Faircloth, S. P. Hubbell. 2016. Use of sonic tomography to detect and quantify wood decay in living trees. Applications in Plant Sciences 4(12):1600060. doi: 10.3732/apps.1600060

103. Finger, J.W., M.T. Hamilton, B.S. Metts, T.C. Glenn, and T.D. Tuberville. 2016. Chronic ingestion of coal fly-ash contaminated prey and its effects on health and immune parameters in juvenile American alligators (Alligator mississippiensis). Archives of Environmental Contamination and Toxicology 71(3): 347-358. doi:10.1007/s00244-016-0301-9

102. Scholpa, N. E., R. T. Kolli, M. Moore, R. D. Arnold, T. C. Glenn, and B. S. Cummings. 2016. Nephrotoxicity of epigenetic inhibitors used for the treatment of cancer. Chem Biol Interact 258:21-29. doi: 10.1016/j.cbi.2016.08.010

101. Rothrock, M. J. Jr., A. Locatelli, T. C. Glenn, J. C. Thomas, A. C. Caudill, B. H. Kiepper, and K. L. Hiett. 2016. Assessing the microbiomes of scalder and chiller tank waters throughout a typical commercial poultry processing day. Poultry Science 95(10):2372-2382. doi:10.3382/ps/pew234

100. Harvey, M. G., B. T. Smith, T. C. Glenn, B. C. Faircloth, and R. T. Brumfield. 2016. Sequence capture versus restriction site associated DNA sequencing for shallow systematics. Systematic Biology 65(5):910-24. doi: 10.1093/sysbio/syw036

99. Glenn, T. C., B. C. Faircloth. 2016. Capturing Darwin’s dream. Molecular Ecology Resources 16(5):1051-1058. doi: 10.1111/1755-0998.12574, PMID: 27543423

98. Hoffberg, S. L., T. J. Kieran, J. M. Catchen, A. Devault, B. C. Faircloth, R. Mauricio, T. C. Glenn. 2016. RADcap: Sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data. Molecular Ecology Resources 16(5):1264-1278. doi: 10.1111/1755-0998.12566, PMID:27416967

97. Meiklejohn, K. A., B. C. Faircloth, T. C. Glenn, R. T. Kimball, and E. L. Braun. 2016. Analysis of a rapid evolutionary radiation using ultraconserved elements (UCEs): Evidence for a bias in some multispecies coalescent methods. Systematic Biology 65(4): 612-627. doi: 10.1093/sysbio/syw014

96. Pierson, T. W., A. M. McKee, S. F. Spear, J. C. Maerz, C. Camp, and T. C. Glenn. 2016. Detection of an enigmatic plethodontid salamander using environmental DNA. Copeia 104(1):78-82.

95. Wong, K., T. I. Shaw, A. Oladiende, T. C. Glenn, B. Oakley, and M. Molina. 2016. Rapid microbiome changes in freshly deposited cow feces under field conditions. Frontiers in Microbiology 7:500 doi: 10.3389/fmicb.2016.00500

94. Bréchignac, F., D. Oughton, C. Mays, L. Barnthouse, J. C. Beasley, A. Bonisoli-Alquati, C. Bradshaw, J. Brown, S. Dray, S. Geras’kin, T. Glenn, K. Higley, K. Ishida, L. Kapustka, U. Kautsky, W. Kuhne, M. Lynch, T. Mappes, S. Mihok, A. Moller, C. Mothersill, T. Mousseau, J. Otaki, E. Pryakhin, O. E. Rhodes Jr., B. Salbu, P. Strand, H. Tsukada. 2016. Addressing ecological effects of radiation on populations and ecosystems to improve protection of the environment against radiation: Agreed statements from a Consensus Symposium. Journal of Environmental Radioactivity 158-159:21-29.

93. Hosner, P. A., B. C. Faircloth, T. C. Glenn, E. L. Braun, and R. T. Kimball. 2016. Avoiding missing data biases in phylogenomic inference: an empirical study in the landfowl (Aves: Galliformes). Molecular Biology and Evolution 33(4):1110-1125. doi:10.1093/molbev/msv347, online 12/29/2015

92. Wang, J., L. Tang, T. Glenn, and J.S. Wang. 2016. Aflatoxin B1 induced compositional changes in gut microbial communities of male F344 rats. Toxicological Sciences. 150(1): 54-63. doi:10.1093/toxsci/kfv259 online 25 Nov. 2015

91. Edwards, S. V., Z. Xi, A. Janke, B. C. Faircloth, J. E. McCormack, T. C. Glenn, B. Zhong, S. Wu, E. M. Lemmon, A. R. Lemmon, A. D. Leaché, L. Liu, and C. C. Davis. 2016. Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics. Molecular Phylogenetics and Evolution 94:447-462. doi:10.1016/j.ympev.2015.10.027 online 27 Oct. 2015

90. Rushmore, J., A. B. Allison, E. E. Edwards, U. Bagal, S. Altizer, M. R. Cranfield, T. C. Glenn, H. Liu, A. Mudakikwa, L. Mugisha, M. N. Muller, R. M. Stumpf, M. E. Thompson, R. Wrangham, and M. J. Yabsley. 2015. Screening wild and semi-free ranging great apes for putative sexually transmitted diseases: Evidence of Trichomonadidae infections. American Journal of Primatology 77(10):1075-1085. doi: 10.1002/ajp.22442 online 26 June 2015 PMID: 26119266; Erratum 79(4):1-2, PMID: 28324622

89. McKee, A. M., D. L. Calhoun, W. J. Barichivich, S. F. Spear, C. S. Goldberg, and T. C. Glenn. 2015. Assessment of environmental DNA for detecting presence of imperiled aquatic amphibian species in isolated wetlands. Journal of Fish and Wildlife Management 6(2):498-510. doi: 10.3996/042014-JFWM-034

88. Graham, C. F., T. C. Glenn, A. McArthur, D. R. Boreham, T. Kieran, S. Lance, R. G. Manzon, J. A. Martino, T. Pierson, S. M. Rogers, J. Wilson, C. M. Somers. 2015. Impacts of degraded DNA on Restriction enzyme Associated DNA Sequencing (RADSeq). Molecular Ecology Resources 15:1304-1315. doi: 10.1111/1755-0998.12404

87. Stephens, J.D., W.L. Rogers, K. Heyduk, J. M. Cruse-Sanders, R. O. Determann, T. C. Glenn, and R. L. Malmberg. 2015. Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment. Molecular Phylogenetics and Evolution 85:76-87.

86. Crawford, N. G., J. F. Parham, A. B. Sellas, B. C. Faircloth, T. C. Glenn, T. J. Papenfuss, and W. B. Simison. 2015. A phylogenomic analysis of turtles. Molecular Phylogenetics and Evolution 83:250-257. doi: 10.1016/j.ympev.2014.10.021

85. Temple, B. L., J. W. Finger Jr., C. A. Jones, J. D. Gabbard, T. Jelesijevic, E. W. Uhl, R. J. Hogan, T. C. Glenn, and S. M. Tompkins. 2015. In ovo and in vitro susceptibility of American alligators to avian influenza virus infection. Journal of Wildlife Diseases 51(1):187-198. doi: 10.7589/2013-12-321

84. Green, R.E., E.L. Braun, J. Armstrong, D. Earl, N. Nguyen, G. Hickey, M.W. Vandewege, J.A. St John, S. Capella-Gutiérrez, T.A. Castoe, C. Kern, M.K. Fujita, J.C. Opazo, J. Jurka, K.K. Kojima, J. Caballero, R.M. Hubley, A.F. Smit, R.N. Platt, C.A. Lavoie, M.P. Ramakodi, J.W. Finger Jr., A. Suh, S.R. Isberg, L. Miles, A.Y. Chong, W. Jaratlerdsiri, J. Gongora, C. Moran, A. Iriarte, J. McCormack, S.C. Burgess, S.V. Edwards, E. Lyons, C. Williams, M. Breen, J.T. Howard, C.R Gresham, D.G. Peterson, J. Schmitz, D.D. Pollock, D. Haussler, E.W. Triplett, G. Zhang, N. Irie, E.D. Jarvis, C.A. Brochu, C.J. Schmidt, F.M. McCarthy, B.C. Faircloth, F.G. Hoffmann, T.C. Glenn, T. Gabaldón, B. Paten, and D.A Ray. 2014. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science 346:1335. DOI: 10.1126/science.1254449

83. Jarvis, E.D., S. Mirarab, A.J. Aberer, B. Li, P. Houde, C. Li, S.Y.W. Ho, B.C. Faircloth, B. Nabholz, J.T. Howard, A. Suh, C.C. Weber, R.R. da Fonseca, J. Li, F. Zhang, H. Li, L. Zhou, N. Narula, L. Liu, G. Ganapathy, B. Boussau, M.S. Bayzid, V. Zavidovych, S. Subramanian, T. Gabaldón, S. Capella-Gutiérrez, J. Huerta-Cepas, B. Rekepalli, K. Munch, M. Schierup, B. Lindow, W.C. Warren, D. Ray, R.E. Green, M. Bruford, X. Zhan, A. Dixon, S. Li, N. Li, Y. Huang, E.P. Derryberry, M. F. Bertelsen, F.H. Sheldon, R.T. Brumfield, C.V. Mello, P.V. Lovell, M. Wirthlin, M.P.C. Schneider, F. Prosdocimi, J.A. Samaniego, A.M.V. Velazquez, A. Alfaro-Núñez, P.F. Campos, B. Petersen, T. Sicheritz-Ponten, A. Pas, T. Bailey, P. Scofield, M. Bunce, D.M. Lambert, Q. Zhou, P. Perelman, A.C. Driskell, B. Shapiro, Z. Xiong, Y. Zeng, S. Liu, Z. Li, B. Liu, K. Wu, J. Xiao, X. Yinqi, Q. Zheng, Y. Zhang, H. Yang, J. Wang, L. Smeds, F.E. Rheindt, M. Braun, J. Fjeldsa, L. Orlando, K. Barker, K. Andreas Jønsson, W. Johnson, K.-P. Koepfli, S. O'Brien, D. Haussler, O.A. Ryder, C. Rahbek, E. Willerslev, G.R. Graves, T.C. Glenn, J. McCormack, D. Burt, H. Ellegren, P. Alström, S.V. Edwards, A. Stamatakis, D.P. Mindell, J. Cracraft, E. L. Braun, T. Warnow, W. Jun, M.T.P. Gilbert, G. Zhang. 2014. Whole genome analyses resolve early branches in the tree of life of modern birds. Science 346:1320-1331. DOI: 10.1126/science.1253451

82. Jaratlerdsiri, W., J. Deakin, R. Godinez, X. Shan, D. G. Peterson, S. Marthey, E. Lyons, F. M. McCarthy, S. R. Isberg, D. P. Higgins, A. Y. Chong, J. St John, T. C. Glenn, D.A. Ray, and J. Gongora. 2014. Comparative genome analyses reveal distinct structural variation in the saltwater crocodile MHC. PLoS ONE 9(12):e114631. doi:10.1371/journal.pone.0114631

81. Smith, B. T., J. E. McCormack, A. M. Cuervo, M. Hickerson, A. Aleixo, C. D. Cadena, J. Pérez-Emán, C. W. Burney, X. Xie, M. G. Harvey, B. C. Faircloth, T. C. Glenn, E. P. Derryberry, J. Prejean, S. Fields, and R. T. Brumfield. 2014. The drivers of tropical speciation. Nature 515:406-409. (20 Nov., 2014) doi:10.1038/nature13687 (online 10 September 2014) PMID: 25209666

80. Sun, K., K. A. Meiklejohn, B. Faircloth, T. Glenn, E. L. Braun, and R. T. Kimball. 2014. The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach. Royal Society B: Biological Sciences 281:20140823. doi: 10.1098/rspb.2014.0823

79. Meiklejohn, K. A., M. J. Danielson, B. C. Faircloth, T. C. Glenn, E. L. Braun, and R. T. Kimball. 2014. Incongruence among different mitochondrial regions: A case study using complete mitogenomes. Molecular Phylogenetics and Evolution 78:314-323.

78. Kenney-Hunt, J., A. Lewandowski, T. C. Glenn, J. L. Glenn, O. V. Tsyusko, R. J. O’Neill, J. Brown, C. M. Ramsdell, Q. Nguyen, T. Phan, K. S. Shorter, M. J. Dewey, G. Szalai, P. B. Vrana, and M. R. Felder. 2014. A genetic map of Peromyscus with chromosomal assignment of linkage groups (a Peromyscus genetic map). Mammalian Genome 25(3-4):160-179. DOI: 10.1007/s00335-014-9500-8 PMID: 24445420

77. Smith, B.T., M. G. Harvey, B. C. Faircloth, T. C. Glenn, and R. T. Brumfield. 2014. Target capture and massively parallel sequencing of ultraconserved elements (UCEs) for comparative studies at shallow evolutionary time scales. Systematic Biology 63(1):83-95. doi: 10.1093/sysbio/syt061

76. Glenn, T. C., S. L. Lance, A. M. McKee, B. L. Webster, A. M. Emery, A. Zerlotini, G. Oliveira, D. Rollinson, and B. C. Faircloth. 2013. Significant variance in genetic diversity among populations of Schistosoma haematobium detected using microsatellite DNA loci from a genome-wide database. Parasites and Vectors 6:300. DOI: 10.1186/1756-3305-6-300

75. Finger, J. W. Jr., A. L. Adams, P. C. Thompson, C. M. Shilton, G. P. Brown, C. Moran, L. G. Miles, T. C. Glenn, and S. R. Isberg. 2013. Using phytohemagglutinin to determine immune responsiveness in saltwater crocodiles (Crocodylus porosus). Australian Journal of Zoology 61:301-311. doi: 10.1071/ZO13041

74. Weber, J. J., S. G. Weller, A. K. Sakai, O. V. Tsyusko, T. C. Glenn, C. A. Domínguez, F. E. Molina-Freaner, J. Fornoni, M. Tran, N. Nguyen, K. Nguyen, L.-K. Tran, G. Joice, and E. Harding. 2013. The role of inbreeding depression and mating system in the evolution of heterostyly. Evolution 67(8): 2309-2322. DOI: 10.1111/evo.12123

73. Shaw, T., Z. Ruan, T. Glenn, and L. Liu. 2013. STRAW: Species Tree Analysis Web server. Nucleic Acids Research 41(WebServer Issue): W238-241. doi:10.1093/nar/gkt377 PMID: 23661681

72. Wu, P., X. Wu, T.-X. Jiang, R. Elsey, B. L. Temple, S. J. Divers, T. C. Glenn, K. Yuan, M.-H. Chen, R. Widelitz, C.-M. Chuong. 2013. Specialized stem cell niche enables repetitive renewal of alligator teeth. Proceedings of the National Academy of Sciences, USA 110(22):E2009-18. PMID: 23671090.

71. Schountz, T., T. Shaw, T. Glenn, H. Feldmann, and J. Prescott. 2013. Expression profiling of lymph node cells from deer mice infected with Andes Virus. BMC Immunology 14:18. doi:10.1186/1471-2172-14-18. PMID: 23570545

70. McCormack, J. E., M. G. Harvey, B. C. Faircloth, N. G. Crawford, T. C. Glenn, and R. T. Brumfield. 2013. A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing. PLoS ONE 8(1): e54848. doi:10.1371/journal.pone.0054848.

69. Shaw, T. I., A. Srivastava, W.-C. Chou, L. Liu, A. Hawkinson, T. C. Glenn, R. Adams, and T. Schountz. 2012. Transcriptome sequencing and annotation for the Jamaican fruit bat (Artibeus jamaicensis). PLoS ONE 7(11): e48472. doi:10.1371/journal.pone.0048472 PMID: 23166587

68. Beal, M. A., T. C. Glenn, S. L. Lance, and C. M. Somers. 2012. Characterization of unstable microsatellites in mice: no evidence for germline mutation induction following gamma-radiation exposure. Environmental and Molecular Mutagenesis 53(8): 599-607. PMID: 22930577 doi: 10.1002/em.21726

67. Srivastava, A., K. Winker, T. I. Shaw, K. L. Jones, and T. C. Glenn. 2012. Transcriptome analysis of a North American songbird, Melospiza melodia. DNA Research 19(4): 325-33, PMID: 22645122, doi: 10.1093/dnares/dss015

66. Crawford, N. G., B. C. Faircloth, J. E. McCormack, R. T. Brumfield, K. Winker and T. C. Glenn. 2012. More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs. Biology Letters 8(5):783-6, PMID: 22593086. doi: 10.1098/rsbl.2012.0331

65. Faircloth, B. C., J. E. McCormack, N. G. Crawford, M. G. Harvey, R. T. Brumfield, and T. C. Glenn. 2012. Ultraconserved elements anchor thousands of genetic markers for target enrichment spanning multiple evolutionary timescales. Systematic Biology 61(5):717-26. doi: 10.1093/sysbio/sys004, PMID: 22232343

64. Faircloth, B. C., and T. C. Glenn. 2012. Not all sequence tags are created equal: Designing and validating sequence identification tags robust to indels. PLoS ONE 7(8):e42543, doi: 10.1371/journal.pone.0042543, PMID: 22900027

63. Everhart, S. E., A. Askew, L. Seymour, T. C. Glenn, and H. Scherm. 2012. Spatial patterns of brown rot epidemics and development of microsatellite markers for analyzing fine-scale genetic structure of Monilinia fructicola populations within peach tree canopies. Online. Plant Health Progress. doi:10.1094/PHP-2012-0723-04-RS.

62. McCormack, J. E., B. C. Faircloth, N. G. Crawford, P. A. Gowaty, R. T. Brumfield, and T. C. Glenn. 2012. Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species tree analysis. Genome Research 22(4): 746-754. doi: 10.1101/gr.125864.111 PMCID: PMC3317156

61. Beal, M. A., T. C. Glenn, and C. M Somers. 2012. Whole genome sequencing for quantifying germline mutation frequency in humans and model species: cautious optimism. Mutation Research: Reviews 750(2):96-106. PMID 22178956. doi:10.1016/j.mrrev.2011.11.002

60. St. John, J. A., E. L. Braun, S. R. Isberg, L. G. Miles, A. Y. Chong, J. Gongora, P. Dalzell, C. Moran, B. Bed’Hom, A. Abzhanov, S. C. Burgess, A. M. Cooksey, T. A. Castoe, N. G. Crawford, L. D. Densmore, J. C. Drew, S. V. Edwards, B. C. Faircloth, M. K. Fujita, M. J. Greenwold, F. G. Hoffmann, J. M. Howard, T. Iguchi, D. E. Janes, S. Y. Khan, S. Kohno, A.P. J. de Koning, S. L. Lance, F. M. McCarthy, J. E. McCormack, M. E. Merchant, D. G. Peterson, D. D. Pollock, N. Pourmand, B. J. Raney, K. A. Roessler, J. R. Sanford, R. H. Sawyer, C. J. Schmidt, E. W. Triplett, T. D. Tuberville, M. Venegas-Anaya, E. D. Jarvis, L. J. Guillette Jr., T. C. Glenn, R. E. Green, and D. A. Ray. 2012. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology 13:415. [Highly Accessed]

59. Kusumi, K., R. J. Kulathinal, A. Abzhanov, S. Boissinot, N. G. Crawford, B. C. Faircloth, T. C. Glenn, D. E. Janes, J. B. Losos, D. B. Menke, S. Poe, T. J. Sanger, C. Schneider, J. Stapley, J. Wade, J. Wilson-Rawls. 2011. Developing a community-based genetic nomenclature for anole lizards. BMC Genomics 12:554. doi:10.1186/1471-2164-12-554.

58. Alföldi, J., F. Di Palma, M. Grabherr, C. Williams, L. Kong, E. Mauceli, P. Russell, C. B. Lowe, R. E. Glor, J. D. Jaffe, D. A. Ray, S. Boissinot, A. M. Shedlock, C. Botka, T. A. Castoe, J. K. Colbourne, M. K. Fujita, R. G. Moreno, B. F. ten Hallers, D. Haussler, A. Heger, D. Heiman, D. E. Janes, J. Johnson, P. J. de Jong, M. Y. Koriabine, M. Lara, P. A. Novick, C. L. Organ, S. E. Peach, S. Poe, D. D. Pollock, K. de Queiroz, T. Sanger, S. Searle, J. D. Smith, Z. Smith, R. Swofford, J. Turner-Maier, J. Wade, S. Young, A. Zadissa, S. V. Edwards, T. C. Glenn, C. J. Schneider, J. B. Losos, E. S. Lander, M. Breen, C. P. Ponting, K. Lindblad-Toh. 2011. The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature 477: 587-591. doi: 10.1038/nature10390

57. Lopes, I. F., A. M. Tomasulo-Seccomandi, A. L. Bryan Jr., I. L. Brisbin Jr., T. C. Glenn, and S. N. Del Lama. 2011. Genetic status of the wood stork (Mycteria americana) from the southeastern United States and the Brazilian Pantanal as revealed by mitochondrial DNA analysis. Genetics and Molecular Research 10 (3): 1910-1922. DOI http://dx.doi.org/10.4238/vol10-3gmr1217

56. Glenn, T. C. 2011. Field guide to next-generation DNA sequencers. Molecular Ecology Resources 11(5):759-769. doi: 10.1111/j.1755-0998.2011.03024.x

55. Trapnell, D.W., J. L. Hamrick, K. C. Parker, K. W. Braungart, and T. C. Glenn. 2011. Evaluating the utility of microsatellites for investigations of autopolyploid taxa. Journal of Heredity 102(4): 473–478. doi:10.1093/jhered/esr045

54. Ma, H., N. J. Kabengi, P. M. Bertsch, J. M. Unrine, T. C. Glenn, and P. L. Williams. 2011. Comparative phototoxicity of nanoparticulate ZnO and bulk ZnO to a free living nematode Caenorhabditis elegans: the importance of illumination mode and primary particle size. Environmental Pollution 159:1473-1480. doi: 10.1016/j.envpol.2011.03.013

53. Tsyusko, O., T. Glenn, Y. Yi, G. Joice, K. Jones, K. Aizawa, D. Coughlin, J. Zimbrick, and T. Hinton. 2011. Differential genetic responses to ionizing irradiation in individual families of Japanese medaka, Oryzias latipes. Mutation Research - Genetic Toxicology and Environmental Mutagenesis 718(1-2): 18-23. DOI: 10.1016/j.mrgentox.2010.11.001.

52. Tuberville, T. D., T. M. Norton, B. J. Waffa, C. Hagen, and T. C. Glenn. 2011. Mating system in a gopher tortoise population established through multiple translocations: apparent advantage of prior residence. Biological Conservation 144(1): 175-183. DOI: 10.1016/j.biocon.2010.08.012

51. Miles, L. G., S. R. Isberg, P. C. Thomson, T. C. Glenn, S. L. Lance, and C. Moran. 2010. QTL mapping for two commercial traits in farmed saltwater crocodiles (Crocodylus porosus). Animal Genetics. 41(2): 142-149. DOI: 10.1111/j.1365-2052.2009.01978.x.

50. Dalzell, P., L. G. Miles, S. R. Isberg, T. C. Glenn, C. King, V. Murtagh, and C. Moran. 2009 [2010]. Standardized reference ideogram for physical mapping in the saltwater crocodile (Crocodylus porosus). Cytogenetic and Genome Research 127(2-4): 204-212. DOI: 10.1159/000293286 [available on-line March 2010, printed April 2010 & back-dated to a publication date of 2009]

49. Croshaw, D. A., M. B. Peters, and T. C. Glenn. 2009. Comparing the performance of analytical techniques for genetic parentage of half-sib progeny arrays. Genetics Research 91(5): 313-325. doi:10.1017/S0016672309990231.

48. Lance, S. L., T. D. Tuberville, L. Dueck, C. Holz-Schietinger, P. L. Trosclair III, R. M. Elsey, and T. C. Glenn. 2009. Multi-year multiple paternity and mate fidelity in the American alligator, Alligator mississippiensis. Molecular Ecology 18(21): 4508-4520. Cover Photo. doi: 10.1111/j.1365-294X.2009.04373.x

47. Miles, L. G., S. R. Isberg, T. C. Glenn, S. L. Lance, P. Dalzell, P. C. Thomson, and C. Moran. 2009. A genetic linkage map for the saltwater crocodile (Crocodylus porosus). BMC Genomics 10:339. doi: 10.1186/1471-2164-10-339 [Highly Accessed, top 100 PubMedCentral, August 2009]

46. Miles, L. G., S. L. Lance, S. R. Isberg, C. Moran, and T. C. Glenn. 2009. Cross-species amplification of microsatellites in crocodilians: assessment and applications for the future. Conservation Genetics 10:935-954. (DOI 10.1007/s10592-008-9601-6, online in 2008).

45. Ma, H., P. M. Bertsch, T. C. Glenn, N. J. Kabengi, and P. L. Williams. 2009. Toxicity of manufactured zinc oxide nanoparticles in the nematode Caenorhabditis elegans. Environmental Toxicology and Chemistry 28(6):1324-1330. DOI: 10.1897/08-262.1

44. Ma, H., T. C. Glenn, C. H. Jagoe, K. L. Jones, and P. L. Williams. 2009. A transgenic strain of the nematode Caenorhabditis elegans as a biomonitor for heavy metal contamination. Environmental Toxicology and Chemistry 28(6):1311-1318. DOI: 10.1897/08-496.1

43. Duffie, C. V., T. C. Glenn, F. H. Vargas, and P. Parker. 2009. Genetic structure among breeding colonies of the Galápagos endemic flightless cormorant (Phalacrocorax harrisi). Molecular Ecology 18(10):2103-2111. Cover Photo. doi: 10.1111/j.1365-294X.2009.04179.x

42. Grus, W., G. Graves, and T. C. Glenn. 2009. Geographic variation in the mitochondrial control region of Black-throated Blue Warblers. The Auk 126(1):198-210.

41. Elsey, R. M., P. L. Trosclair, III, and T. C. Glenn. 2008. Nest site fidelity in American Alligators in a Louisiana Coastal Marsh. Southeastern Naturalist 7(4): 737-743.

40. Glenn, T. C., J. O. French, T. J. Heincelman, K. L. Jones, and R. H. Sawyer. 2008. Evolutionary relationships among copies of feather beta (b) keratin genes from several avian orders. Integrative and Comparative Biology 48(4):463-475. doi: 10.1093/icb/icn061

39. Francl, K. E., T. C. Glenn, S. B. Castleberry, and W. M. Ford. 2008. Genetic relationships of meadow vole (Microtus pennsylvanicus) populations in central Appalachian wetlands. Canadian Journal of Zoology 86(5):344-355.

38. Glenn, J. L. W., C.-F. Chen, A. Lewandowski, C.-H. Cheng, C. M. Ramsdell, R. Bullard-Dillard, J. Chen, M. J. Dewey, and T. C. Glenn. 2008. Expressed Sequence Tags from Peromyscus testis and placenta tissue: analysis, annotation, and utility for mapping. BMC Genomics 9:300. doi: 10.1186/1471-2164-9-300

37. Winn, R. N., A. J. Majeske, C. H. Jagoe, T. C. Glenn, M. H. Smith, and M. B. Norris. 2008. Transgenic l medaka: a new model for germ cell mutagenesis. Environmental and Molecular Mutagenesis 49(3): 173-184.

36. Fokidis, H. B., T. S. Risch, and T. C. Glenn. 2007. Reproductive and resource benefits to large female body size in a mammal with female-biased sexual size dimorphism. Animal Behavior 73:479-488.

35. Tsyusko, O. V., Y. Yi, D. Coughlin, D. Main, R. Podolsky, T. G. Hinton, and T. C. Glenn. 2007. Radiation-induced untargeted germline mutations in Japanese Medaka. Comparative Biochemistry & Physiology Part C 145: 103-110. [doi:10.1016/j.cbpc.2006.08.010, online 2006]

34. Stepanauskas, R., T. C. Glenn, C. H. Jagoe, R. C. Tuckfield, A. H. Lindell, C. J. King, and J V. McArthur. 2006. Coselection for microbial resistance to metals and antibiotics in freshwater mesocosms. Environmental Microbiology 8(9):1510-1514. PMID: 16913911

33. Tsyusko, O. V., M. H. Smith, T. K. Oleksyk, J. Goryanaya, and T. C. Glenn. 2006. Genetics of cattails in radioactively contaminated areas around Chornobyl. Molecular Ecology 15:2611-2625.

32. Peles, J. D., T. C. Glenn, H. A. Brant, A. K. Wall, and C. H. Jagoe. 2006. Mercury concentrations in largemouth bass (Micropterus salmoides) from five South Carolina reservoirs. Water, Air, & Soil Pollution 173: 151-162.

31. Korfanta, N. M., D. B. McDonald, and T. C. Glenn. 2005. Burrowing owl (Athene cunicularia) population genetics: a comparison of North American forms and migratory habits. The Auk 122(2): 464-478.

30. Tsyusko, O. V., M. H. Smith, R. R. Sharitz, and T. C. Glenn. 2005. Genetic and clonal diversity of two cattail species, Typha latifolia and T. angustifolia (Typhaceae) from Ukraine. American Journal of Botany 92(7):1161-1169.

29. Comer, C. E., J. C. Kilgo, G. J. D’Angelo, T. C. Glenn and K. V. Miller. 2005. Fine-scale genetic structure and social organization in female white-tailed deer. Journal of Wildlife Management 69:332-344.

28. Stepanauskas, R., T. C. Glenn, C. H. Jagoe, R. C. Tuckfield, A. H. Lindell, and J V. McArthur. 2005. Elevated microbial tolerance to metals and antibiotics in metal-contaminated industrial environments. Environmental Science and Technology. 39:3671-3678. PMID: 15952371

27. Sawyer, R. H., T. C. Glenn, J. O. French, and L. W. Knapp. 2005. Developing antibodies to synthetic peptides based on comparative DNA sequencing of multigene families. Methods in Enzymology 395:636-652.

26. Glenn, T. C. and N. A. Schable. 2005. Isolating microsatellite DNA loci. Methods in Enzymology 395:202-222.

25. Hauswaldt, J. S. and T. C. Glenn. 2005. Population genetics of the diamondback terrapin (Malaclemys terrapin). Molecular Ecology 14:723-732.

24. Sawyer, R. H., L. Rogers, L. Washington, T. C. Glenn and L. W. Knapp. 2005. The evolutionary origin of the feather epidermis. Developmental Dynamics 232(2):256-267.

23. Staton, J. L., B. E. Taylor, N. V. Schizas, R. Wetzer, T. C. Glenn, and B. C. Coull. 2003. Mitochondrial gene diversity of Skistodiaptomus mississippiensis in impoundments of the Upper Coastal Plain near Aiken, South Carolina, USA. Archive fur Hydrobiologie 158(2):215-231.

22. Sawyer, R. H., L. D. Washington, B. A. Salvatore, T. C. Glenn, and L. W. Knapp. 2003. Origin of avian epidermal appendages: The bristles of the wild turkey beard express feather-type b keratins. Journal of Experimental Zoology (Molecular Development and Evolution) 297B:27-34.

21. Sawyer, R. H., B. A. Salvatore, T. F. Potylicki, J. O. French, T. C. Glenn, and L. W. Knapp. 2003. Origin of feathers: Feather beta (b) keratins are expressed in discrete epidermal cell populations of embryonic scutate scales. Journal of Experimental Zoology (Molecular Development and Evolution) 295B:12-24.

20. Krizek, B. A., V. Prost, R. M. Joshi, T. Stoming, and T. C. Glenn. 2003. Developing transgenic Arabidopsis plants to be metal-specific bioindicators. Environmental Toxicology and Chemistry 22(1): 175–181.

19. Davis L. M., T. C. Glenn, D. C. Strickland, L. J. Guillette, Jr., R. M. Elsey, W. E. Rhodes, H. C. Dessauer, and R. H. Sawyer. 2002. Microsatellite DNA analyses support an east-west phylogeographic split of American alligator populations. Journal of Experimental Zoology (Molecular Development and Evolution) 294(4): 352-372.

18. Glenn, T. C., J. L. Staton, A. Vu, L. M. Davis, J. R. Alvarado Bremer, W. H. Rhodes, I. L. Brisbin Jr., and R. H. Sawyer. 2002. Low mitochondrial DNA variation among American alligators and a novel non-coding region in crocodilians. Journal of Experimental Zoology (Molecular Development and Evolution) 394(4): 312-324.

17. Dessauer H. C., T. C. Glenn, and L. D. Densmore. 2002. Studies on the molecular evolution of the crocodilia: footprints in the sands of time. Journal of Experimental Zoology (Molecular Development and Evolution) 294(4): 302-311.

16. Jones, K. L., T. C. Glenn, R. C. Lacy, J. R. Pierce, N. Unruh, C. M. Mirande, and F. Chavez-Ramirez. 2002. Refining the Whooping Crane studbook by incorporating microsatellite DNA and leg banding analyses. Conservation Biology 16(3): 789-799.

15. Glenn, T. C., J. E. Thompson, B. M. Ballard, J. A. Roberson, J. O. French. 2002. Mitochondrial DNA variation and subspecific status of mid-continent gulf coast sandhill cranes. Journal of Wildlife Management 66(2): 339-348.

14. Rotstein, D. S., T. R. Schoeb, L. M. Davis, T. C. Glenn, B. S. Arnold, and T. S. Gross. 2002. Detection by microsatellite analysis of early embryonic mortality in an alligator population in Florida. Journal of Wildlife Diseases 38(1): 160-165.

13. Oleksyk, T. K., S. P. Gashchak, T. C. Glenn, C. H. Jagoe, J. D. Peles, J. R. Purdue, O. V. Tsyusko, O. O. Zalissky, and M. H. Smith. 2002. Distribution of 137Cs in fish and mammal populations. Journal of Environmental Radioactivity 61(1): 55-74.

12. Brown, M. C. L., S. Guttman, and T. C. Glenn. 2001. Development and use of microsatellite DNA loci for genetic ecotoxicological studies of the fathead minnow (Pimephales promelas). Ecotoxicology 10(4): 233-238.

11. Davis, L. M., T. C. Glenn, H. C. Dessauer, R. M. Elsey, and R. H. Sawyer. 2001. Multiple paternity in the American alligator, Alligator mississipiensis. Molecular Ecology 10(4): 1011-1024.

10. Kind, J. A., R. N. Winn, M. E. T. I. Boerrigter, C. H. Jagoe, T. C. Glenn, and C. E. Dallas. 2001. Investigation of the radioadaptive response in brain and liver of pUR288 lacZ transgenic mice. Journal of Toxicology and Environmental Health, Part A, 63(3): 207-220.

9. Plague, G. R., M. Mulvey, T. C. Glenn, and J V. McArthur. 2001. Molecular genetic markers provide no evidence for reproductive isolation among retreat building phenotypes of the net-spinning caddisfly Macrostemum carolina. Molecular Ecology 10(1): 243-248.

8. Sawyer, R. H., T. C. Glenn, J. O. French, B. Mays, R. B. Shames, G. L. Barnes Jr., W. Rhodes and Y. Ishikawa. 2000. The expression of beta keratins in the epidermal appendages of reptiles and birds: The Beta Keratins of claws, scales and feathers. American Zoologist 40(4): 530-539.

7. Glenn, T. C., W. Stephan, and M. J. Braun. 1999. Effects of a population bottleneck on Whooping Crane mitochondrial DNA variation. Conservation Biology 13: 1097-1107.

6. Glenn, T. C., H. D. Dessauer, and M. J. Braun. 1998. Characterization of microsatellite DNA loci in American alligators. Copeia 1998(3): 591-601.

5. Glenn, T. C., W. Stephan, H. D. Dessauer, and M. J. Braun. 1996. Allelic diversity in alligator microsatellite loci is negatively correlated with GC content of flanking sequences and evolutionary conservation of PCR amplifiability. Molecular Biology and Evolution 13(8): 1151-1154.

4. Smith, D. R. and T. C. Glenn. 1995. Allozyme polymorphisms in Spanish honeybees (Apis mellifera iberica). Journal of Heredity 86(1): 12-16.

3. Glenn, T. C., D. R. Waller and M. J. Braun. 1994. Increasing proportions of uracil in DNA substrates increases inhibition of restriction enzyme digests. BioTechniques 17(6): 1086-1090.

2. Glenn, T. C. and D. R. Smith. 1993. Genetic variation and subspecific relationships of Michigan elk (Cervus elaphus). Journal of Mammalogy 74(3): 782-792.

1. Glenn, T. C. and W. R. Clark. 1990. Correlation of raccoon pelt qualities with age, sex, and physical condition. Journal of the Iowa Academy of Sciences 97(1): 33-35.

Genetic Resource, Primer, and Technical Notes (all peer-reviewed, most by a single editor, some with multiple reviewers):

*Bold number – indicates a resource of substantial importance (hundreds of markers)

N69. Medolago, C. A. B., M. C. Costa, F. K. Ubaid, T. C. Glenn, L. F. Silveira, M. R. Francisco. 2018. Isolation and characterization of microsatellite markers for conservation management of the endangered Great-billed Seed-finch, Sporophila maximiliani (Aves, Passeriformes), and cross-amplification in other congeners. Molecular Biology Reports 45 (6):2815-2819. DOI: 10.1007/s11033-018-4377-3. PMID: 30232780

N68. Bayona-Vásquez, N. J., T. Glenn, O. Domínguez-Domínguez, M. Uribe-Alcocer, and P. Díaz-Jaimes. 2017. Mitochondrial genomes of the Pacific sierra mackerel Scomberomorus sierra and the Monterey Spanish mackerel Scomberomorus concolor (Perciformes, Scomridae). Conservation Genetics Resources, Published on-line in 2017, DOI: 10.1007/s12686-017-0851-9

N67. Bayona-Vásquez, N. J., T. Glenn, M. Uribe-Alcocer, C. Pecoraro, and P. Díaz-Jaimes. 2017. Complete mitochondrial genome of the yellowfin tuna (Thunnus albacares) and the blackfin tuna (Thunnus atlanticus): notes on mtDNA introgression and paraphyly on tunas. Conservation Genetics Resources, Published on-line in 2017, DOI: 10.1007/s12686-017-0904-0

N66. Bayona-Vásquez, N. J., Hernández-Álvarez, C. A., Glenn, T., Domínguez-Domínguez, O., Uribe-Alcocer, M., & Díaz-Jaimes, P. 2017. Complete mitogenome sequences of the pacific red snapper (Lutjanus peru) and the spotted rose snapper (Lutjanus gutattus). Mitochondrial DNA Part A 28(2):223-224. DOI: 10.3109/19401736.2015.1115851

N65. Pruet, C. L., L. Wan, T. Li, C. Spern, S. L. Lance, T. Glenn, B. Faircloth, and K. Winker. 2015. Development and characterization of microsatellite loci from common raven (Corvus corax) and cross species amplification in other Corvidae. BMC Research Notes 8:655. doi: 10.1186/s13104-015-1643-5

N65. Dahn, H. A., J. B. Lee, K. E. Bentley, T. C. Glenn, and R. Mauricio. 2015. Development of 12 novel microsatellite loci for invasive Chinese privet (Ligustrum sinense) from its introduced range. Conservation Genetics Resources 7(2):467-469.

N64. Hoffberg, S. L., K. E. Bentley, J. B. Lee, K. E. Myhre, K. Iwao, T. C. Glenn, and R. Mauricio. 2015. Characterization of 15 microsatellite loci in kudzu (Pueraria montana var. lobata) from the native and introduced ranges. Conservation Genetics Resources 7(2):403-405. doi: 10.1007/s12686-014-0381-7

N63. Bentley, K. E., K. R. Berryman, M. Hopper, S. L. Hoffberg, K. E. Myhre, K. Iwao, J. B. Lee, T. C. Glenn, and R. Mauricio. 2015. Eleven microsatellites for an emerging invader, Phytolacca americana (Phytolaccaceae), from its native and introduced ranges. Applications in Plant Sciences 3(3):1500002.

N62. Denton, R. D., T. C. Glenn, and H. L. Gibbs. 2015. Development of 31 new microsatellite loci for two mole salamanders (Ambystoma laterale and A. jeffersonianum). Conservation Genetics Resources 7(1):167-170. doi: 10.1007/s12686-014-0320-7

N61. de Camargo, C., M. C. Costa, G. C. Del Rio, H. L. Gibbs, T. C. Glenn, U. Bagal, L. F. Silveira, A. P. Wasko, and M. R. Francisco. 2015. Novel and cross-amplified microsatellite loci for the critically endangered São Paulo Marsh Antwren, Formicivora paludicola (Aves: Thamnophilidae). Conservation Genetics Resources 7(1):129-131. doi: 10.1007/s12686-014-0310-9

N60. Pruett, C. L., C. Whelan, A. Ricono, S. L. Lance, T. Glenn, B. Faircloth, and K. Winker. 2014. Development and characterization of microsatellite loci for two species of Beringian birds, rock sandpiper (Calidris ptilocnemis) and Pacific wren (Troglodytes pacificus). Conservation Genetics Resources. 6:175-177. doi: 10.1007/s12686-013-0040-4

N59. Shirk, R. Y., T. C. Glenn, S.-M. Chang, and J. L. Hamrick. 2013. Development and characterization of microsatellite primers in Geranium carolinianum (Geraniaceae) with 454 sequencing. Applications in Plant Sciences 1(8):1300006. doi: 10.3732/apps.1300006

N58. Ross, A. A., L. Aldrich-Wolfe, S. Lance, T. Glenn, and S. E. Travers. 2013. Microsatellite markers in the Western Prairie Fringed Orchid, Platanthera praeclara (Orchidaceae). Applications in Plant Sciences 1(4):1200413. doi: 10.3732/apps.1200413

N57. Kartzinel, T. R., D. W. Trapnell, and T. C. Glenn. 2012. Microsatellite primers for the Neotropical epiphyte Epidendrum firmum (Orchidaceae). American Journal of Botany 99(11):e450-e452. doi: 10.3732/ajb.1200232.

N56. Wu Q., X. Wu, and T. C. Glenn. 2012. Fourteen novel microsatellite loci in the Chinese alligator (Alligator sinensis) isolated via 454 pyrosequencing. Conservation Genetics Resources 4:729-732. DOI: 10.1007/s12686-012-9632-7

N55. Subalusky, A. L., R. C. Garrick, N. A. Schable, J. Osborne, and T. C. Glenn. 2012. Development and characterization of tetranucleotide microsatellite loci for the American alligator (Alligator mississippiensis). Conservation Genetics Resources 4:567-570. DOI: 10.1007/s12686-011-9593-2

N54. McKee, A. M., S. L. Lance, K. L. Jones, C. Hagen, L. L. Smith and T. C. Glenn. 2011. Development and characterization of 12 microsatellite loci for the Dwarf Salamander, Eurycea quadridigitata. Conservation Genetics Resources 3:633-635. DOI: 10.1007/s12686-011-9421-8

N53. Varela-Álvarez, E., T. C. Glenn, E. A. Serrão, C. M. Duarte, B. Mártinez-Daranas, M. Valero, and N. Marbá. 2011. Dinucleotide microsatellite markers in the genus Caulerpa. Journal of Applied Phycology 23:715-719. DOI: 10.1007/s10811-010-9568-9

N52. McKee, A. M., S. L. Lance, K. L. Jones, C. Hagen and T. C. Glenn. 2011. Development and characterization of 18 microsatellite loci for the Southern Leopard Frog, Rana sphenocephala. Conservation Genetics Resources 3(2): 267-269. DOI: 10.1007/s12686-010-9338-7

N51. Jackson, N. D., T. C. Glenn, C. Hagen, S. L. Lance, and C. C. Austin. 2011. Microsatellites isolated from the North American ground skink (Scincella lateralis). Conservation Genetics Resources 3(1): 95-97. DOI 10.1007/s12686-010-9299-x

N50. Coghill, L. M., J. Chaves-Campos, F. E. Espinoza, S. L. Lance, T. C. Glenn, and S. G. Johnson. 2011. Microsatellite markers isolated from the Mexican banded spring snail Mexipyrgus churinceanus. Conservation Genetics Resources 3(1): 29-31. DOI 10.1007/s12686-010-9273-7

N49. Jones, K. L., J. R. Henkel, J. J. Howard, S. L. Lance, C. Hagen, and T. C. Glenn. 2010. Isolation and characterization of 14 polymorphic microsatellite DNA loci for the endangered Whooping Crane (Grus americana) and their applicability to other crane species. Conservation Genetics Resources 2:251-254. DOI 10.1007/s12686-010-9196-3, erratum 2:255, doi 10.1007/s12686-010-9250-1

*N48. Weber, J. N., M. B. Peters, O.V. Tsyusko, C. R. Linnen, C. Hagen, N. A. Schable, T. D. Tuberville, A. M. McKee, S. L. Lance, K. L. Jones, H. S. Fisher, M. J. Dewey, H. E. Hoekstra, and T. C. Glenn. 2010. Five hundred microsatellite loci for Peromyscus. Conservation Genetics 11(3): 1243-1246. DOI 10.1007/s10592-009-9941-x

N47. Lance, S. L., C. Hagen, T. C. Glenn, N. A. Freidenfelds, and T. Langkilde. 2009. Development and characterization of seventeen polymorphic microsatellite loci in the eastern fence lizard, Sceloporus undulatus. Conservation Genetics Resources 1(1): 233-236. DOI 10.1007/s12686-009-9057-0

N46. Brown, J. L., M. Chouteau, T. Glenn, and K. Summers. 2009. The development and analysis of twenty-one microsatellite loci for three species of Amazonian poison frogs. Conservation Genetics Resources 1(1):149-151. DOI: 10.1007/s12686-009-9057-0

N45. Eo, S. H., W.-S. Lee, T. C. Glenn, K. L. Jones, E.-J. Lee, Y.-S. Park, J. P. Carroll, S.-J. Rhim. 2009. Development of polymorphic microsatellite DNA markers from the Korean field mouse, Apodemus peninsulae. Conservation Genetics 10(6): 1923–1925. DOI 10.1007/s10592-009-9855-7

N44. Lance, S.L., C. Hagen, T. C. Glenn, J. J. Apodaca, and L. J. Rissler. 2009. Development and characterization of twelve polymorphic microsatellite loci in the threatened Red Hills salamander, Phaeognathus hubrichti. Conservation Genetics 10(6): 1919–1921. DOI 10.1007/s10592-009-9854-8

N43. Lance, S.L., K. L. Jones, C. Hagen, T. C. Glenn, J. M. Jones, and J. P. Gibson. 2009. Nineteen polymorphic microsatellite loci from seaside alder, Alnus maritime. Conservation Genetics 10(6): 1907–1910. DOI 10.1007/s10592-009-9851-y

N42. Peters, M. B., J. R. Ovenden, K. Broderick, S. L. Lance, C. Hagen, and T. C. Glenn. 2009. Fifteen microsatellite loci for the jungle perch, Kuhlia rupestris. Molecular Ecology Resources 9 (6): Note 1467. DOI 10.1111/j.1755-0998.2009.02735.x

N41. Lance, S. L., C. Hagen, T. C. Glenn, R. T. Brumfield, K. F. Stryjewski, and G. R. Graves. 2009. Fifteen polymorphic microsatellite loci from Jamaican streamertail hummingbirds (Trochilus). Conservation Genetics 10:1195-1198. DOI 10.1007/s10592-008-9748-1

N40. Vary, L. B., S. L. Lance, C. Hagen, O. Tsyusko, T. C. Glenn, A. K. Sakai, and S. G. Weller. 2009. Characterization of microsatellite loci from the Malagasy endemic, Tina striata Radlk. (Sapindaceae). Conservation Genetics 10:1113-1115. DOI 10.1007/s10592-008-9721-z

*N39. Miles, L. G., S. R. Isberg, C. Moran, C. Hagen, and T. C. Glenn. 2009. 253 novel polymorphic microsatellites for the saltwater crocodile (Crocodylus porosus). Conservation Genetics 10:963-980. DOI 10.1007/s10592-008-9600-7

N38. Faircloth, B. C., T. M. Terhune, N. A. Schable, T. C. Glenn, W. E. Palmer, and J. P. Carroll. 2009. Ten microsaellite loci from the Northern Bobwhite (Colinus virginianus). Conservation Genetics 10:535-538. DOI 10.1007/s10592-008-9559-4

N37. Peters, M. B., N. K. Whiteman, C. Hagen, P. G. Parker, and T. C. Glenn. 2009. Eight polymorphic microsatellite markers isolated from the widespread avian louse Colpocephalum turbinatum (Phthiraptera: Amblycera: Menoponidae). Molecular Ecology Resources 9(3): 910-912. doi: 10.1111/j.1755-0998.2008.02473.x

N36. Peters M. B., C. Hagen, N. K. Whiteman, P. G. Parker, and T. C. Glenn. 2009. Characterization of 10 microsatellite loci in an avian louse, Degeeriella regalis (Phthiraptera: Ischnocera: Philopteridae). Molecular Ecology Resources 9(3): 882-884. doi: 10.1111/j.1755-0998.2008.02363.x

N35. Peters M. B., C. Hagen, B. Snyder, T. C. Glenn, and P. A. Gowaty. 2009. Microsatellite markers isolated from Drosophila hydei. Molecular Ecology Resources 9(3):817-819. doi: 10.1111/j.1755-0998.2008.02266.x

N34. Crawford, N. G., M. B. Peters, C. Hagen, T. C. Glenn, S. K. Davis, and C. M. Somers. 2009. Polymorphic microsatellite loci from Sprague's pipit (Anthus spragueii), a grassland endemic passerine bird. Molecular Ecology Resources 9(1): 315-317. doi: 10.1111/j.1755-0998.2008.02240.x

N33. Meares, K., D. A. Dawson, G. J. Horsburgh,, T. C. Glenn, K. L. Jones, M. J. Braun, M. R. Perrin, and T. D. Taylor. 2009. Microsatellite loci characterized in three African crane species (Gruidae, AVES). Molecular Ecology Resources. 9(1): 308-311. doi: 10.1111/j.1755-0998.2008.02440.x

N32. Hickman, C. R., M. B. Peters, N. G. Crawford, C. Hagen, T. C. Glenn, and C. M. Somers. 2008. Development and characterization of microsatellite loci in the American white pelican (Pelecanus erythrorhynchos). Molecular Ecology Resources 8(6):1439-1441. doi: 10.1111/j.1755-0998.2008.02191.x

N31. Duffie, C., T. C. Glenn, C. Hagen, and P. Parker. 2008. Microsatellite markers isolated from the flightless cormorant (Phalacrocorax harrisi). Molecular Ecology Resources 8(3):625-627. doi: 10.1111/j.1471-8286.2007.02024.x

N30. Crawford, N. G., C. Hagen, H. F. Sahli, E. A. Stacey, and T. C. Glenn. 2008. Fifteen polymorphic microsatellite DNA loci from Hawaii's Metrosideros polymorpha (Myrtaceae: Myrtales), a model species for ecology and evolution. Molecular Ecology Resources. 8(2): 308-310. doi: 10.1111/j.1471-8286.2007.01937.x

N29. Crawford, N. G., J. Zaldívar-Rae, C. Hagen, N. A. Schable, E. B. Rosenblum, T. W. Reeder, J. A. Graves, and T. C. Glenn. 2008. Twelve polymorphic microsatellite DNA loci from whiptails of the genus Aspidoscelis and related cnemidophorine lizards. Molecular Ecology Resources. 8(1): 219-223. doi: 10.1111/j.1471-8286.2007.01930.x

N28. Lutz-Carrillo, D. J., C. Hagen, L. A. Dueck, and T. C. Glenn. 2008. Isolation and characterization of microsatellite loci for Florida largemouth bass, Micropterus salmoides floridanus, and other micropterids. Molecular Ecology Resources 8(1): 178-184. doi: 10.1111/j.1471-8286.2007.01917.x

N27. Peters, M. B., K. H. Beard, C. Hagen, E. M. O’Neill, K. E. Mock, W. C. Pitt, and T. C. Glenn. 2008. Isolation of microsatellite loci from the coqui frog, Eleutherodactylus coqui. Molecular Ecology Resources 8(1): 139-141. doi: 10.1111/j.1471-8286.2007.01899.x

N26. Peters, M. B., C. Hagen, D. Trapnell, J. Hamrick, O. Rocha, P. Smouse, and T. C. Glenn. 2008. Isolation and characterization of microsatellite loci in the Guanacaste tree, Enterolobium cyclocarpum Molecular Ecology Resources 8(1): 129-131. doi: 10.1111/j.1471-8286.2007.01896.x

N25. Hill, C. E., S. Tomko, C. Hagen, N. A. Schable, and T. C. Glenn. 2008. Novel microsatellite markers for the saltmarsh sharp-tailed sparrow, Ammodramus caudacutus. Molecular Ecology Resources 8(1): 113-115. doi: 10.1111/j.1471-8286.2007.01885.x

N24. Crispo, E., C. Hagen, T. C. Glenn, G. Geneau, and L. J. Chapman. 2007. Isolation and characterization of tetranucleotide microsatellite markers in a mouth-brooding haplochromine cichlid fish (Pseudocrenilabrus multicolor victoriae) from Uganda. Molecular Ecology Notes 7(6): 1293-1295. doi: 10.1111/j.1471-8286.2007.01859.x

N23. Tsyusko, O., T. D. Tuberville, M. B. Peters, N. Crawford, C. Hagen, S. Weller, A. Sakai, and T. C. Glenn. 2007. Microsatellite markers isolated from polyploid wood-sorrell Oxalis alpina (Oxalidaceae). Molecular Ecology Notes 7(6): 1284-1286. doi: 10.1111/j.1471-8286.2007.01856.x

N22. Ruiz-Guajardo, J. C., A. Otero-Arnaiz, T. Taylor, G. Stone, T. C. Glenn, N. A. Schable, J. T. Miller, S. Preuss, and A. Schnabel. 2007. Isolation of polymorphic microsatellite markers in the sub-Saharan tree, Acacia (Senegalia) mellifera (Fabaceae: Mimosoideae). Molecular Ecology Notes 7(6): 1138-1140. doi: 10.1111/j.1471-8286.2007.01809.x

N21. Tsyusko, O., M. B. Peters, T. D. Tuberville, C. Hagen, S. M. Eppley and T. C. Glenn. 2007. Microsatellite markers isolated from saltgrass (Distichlis spicata). Molecular Ecology Notes 7:883-885. doi: 10.1111/j.1471-8286.2007.01737.x

N20. Peters, M. B., J. L. Glenn, P. Svete, C. Hagen, O. V. Tsyusko, P. DeCoursey, M. Lieutenant-Gosselin, D. Garant, and T. C. Glenn. 2007. Development and characterization of microsatellite loci in the eastern chipmunk (Tamias striatus). Molecular Ecology Notes 7:877-879. doi: 10.1111/j.1471-8286.2007.01735.x

N19. Tsyusko, O. V., M. B. Peters, C. Hagen, T. D. Tuberville, T. A. Mousseau, A. P. Møller and T. C. Glenn. 2007. Microsatellite markers isolated from barn swallows (Hirundo rustica). Molecular Ecology Notes 7:833-835. doi: 10.1111/j.1471-8286.2007.01719.x

N18. Mullen, L. M., R. J. Hirschmann, K. L. Prince, T. C. Glenn, M. J. Dewey, and H. E. Hoekstra. 2006. Sixty polymorphic microsatellite markers for the oldfield mouse developed in Peromyscus polionotus and P. maniculatus. Molecular Ecology Notes 6:36-40.

N17. Croshaw, D. A., N. A. Schable, M. B. Peters, and T. C. Glenn. 2005. Isolation and characterization of microsatellite DNA loci from Ambystoma salamanders. Conservation Genetics 6:473-479.

N16. Faircloth, B. C., A. Reid, T. Valentine, S. H. Eo, T. M. Terhune, T. C. Glenn, W. E. Palmer, C. J. Nairn, and J. P. Carroll. 2005. Tetranucleotide, trinucleotide, and dinucleotide loci from the bobcat (Lynx rufus). Molecular Ecology Notes 5:387-389.

N15. Otero-Arnaiz, A., A. Schnabel, T. C. Glenn, N.A. Schable, C. Hagen, and L. Ndong. 2005. Isolation and characterization of microsatellite markers in the East African tree, Acacia brevispica (Fabaceae: Mimosoideae). Molecular Ecology Notes 5: 366-368.

N14. Weston, J. L., N. A. Schable, and T. C. Glenn. 2004. Characterization of six microsatellite primers for the gray fox (Urocyon cinereoargenteus). Molecular Ecology Notes 4:503-505.

N13. Schable, N. A., B. C. Faircloth, W. E. Palmer, J. P. Carroll, L. W. Burger, L. A. Brennan, C. Hagen, and T. C. Glenn. 2004. Tetranucleotide and dinucleotide microsatellite loci from the northern bobwhite (Colinus virginianus). Molecular Ecology Notes 4:415-419.

N12. Koopman, M. E., N. A. Schable, and T. C. Glenn. 2004. Development and optimization of microsatellite DNA primers for boreal owls (Aegolius funereus). Molecular Ecology Notes 4:376-378.

N11. Tomasulo-Seccomandi, A. M., N. A. Schable, A. L. Bryan Jr., I. L. Brisbin Jr., S. N. Del Lama, and T. C. Glenn. 2003. Development of microsatellite DNA loci from the wood stork (Mycteria americana). Molecular Ecology Notes 3:563-566.

N10. Croshaw, D. A. and T. C. Glenn. 2003. Polymorphic tetranucleotide microsatellite DNA loci from the southern dusky salamander (Desmognathus auriculatus). Molecular Ecology Notes 3:623-625.

N9. Fokidis, H.B., N. A. Schable, C. Hagen, T. C. Glenn, and T. S. Risch. 2003. Characterization of microsatellite DNA loci for the southern flying squirrel (Glaucomys volans). Molecular Ecology Notes 3:616-618.

N8. Tsyusko-Omeltchenko, O. V., N. A. Schable, M. H. Smith and T. C. Glenn. 2003. Microsatellite loci isolated from narrow-leaved cattail Typha angustifolia. Molecular Ecology Notes 3:535-538.

N7. Croshaw, D. A. and T. C. Glenn. 2003. Seven polymorphic microsatellite DNA loci from the red-spotted newt (Notophthalmus viridescens). Molecular Ecology Notes 3:514-516.

N6. Hauswaldt, J. S. and T. C. Glenn. 2003. Microsatellite DNA loci from the Diamondback terrapin (Malaclemys terrapin). Molecular Ecology Notes 3:174-176.

N5. Korfanta, N. M., N. A. Schable, and T. C. Glenn. 2002. Isolation and characterization of microsatellite DNA primers in burrowing owl (Athene cunicularia). Molecular Ecology Notes 2(4): 584-585.

N4. Schable, N. A., R. U. Fischer, and T. C. Glenn. 2002. Tetranucleotide microsatellite DNA loci from the dollar sunfish (Lepomis marginatus). Molecular Ecology Notes 2(4): 509-511.

N3. Prince, K. L., T. C. Glenn, and M. J. Dewey. 2002. Cross-species amplification among peromyscines of new microsatellite DNA loci from the oldfield mouse (Peromyscus polionotus subgriseus). Molecular Ecology Notes 2(2): 133-136.

N2. Winker, K., T. C. Glenn, and G. R. Graves. 1999. Dinucleotide microsatellite loci in a migratory wood warbler (Parulidae: Limnothlypis swainsonii), and amplification among other songbirds. Molecular Ecology 8(9): 1553-1556.

N1. Glenn, T. C. and S. J. Glenn. 1994. Rapid elution of DNA from agarose gels using polyester plug spin inserts (PEPSIs). Trends in Genetics 10(10): 344.

Books or Journal Special Issues

4. Glenn, T. C., A. Moussalli, B. C. Faircloth (guest eds). 2016. Special Issue: Sequence Capture. Molecular Ecology Resources Vol. 16, Issue No. 5, September, 2016.

3. Densmore, L. D. and T. C. Glenn (guest eds). 2008. Special Issue: Crocodylian Genetics and Biology. Journal of Experimental Zoology (Ecological Genetics and Physiology) Vol. 310A, Issue No. 10.

2. Densmore, L. D. and T. C. Glenn (guest eds). 2002. Special Issue: Molecular Evolution of the Crocodylia. Journal of Experimental Zoology (Molecular and Developmental Evolution) Vol. 295, Issue No. 4.

1. Andrews, R. D., N. Bock, W. Funke, T. Glenn, R. Goode, M. Long, M. O’Connor, M. Sells, and D. Sievers. 1993. Iowa fur harvester education: student manual. Iowa Department of Natural Resources, Des Moines, IA. 147pp.

Proceedings, Book Chapters, and Other publications (* = rigorous peer review, equivalent to journal publication)

13. Heyduk K., J. D. Stephens, B. C. Faircloth, and T. C. Glenn. 2016. Targeted DNA Region Re-sequencing. Pages 43-68 in Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing (Aransay AM and JLL Trueba, eds.). Springer International Publishing, Switzerland. doi: 10.1007/978-3-319-31350-4_3.

12. Finger Jr., J. W., P. C. Thomson, U. R. Bagal, C. Moran, T. C. Glenn, L. G. Miles, M. S. Khatkar, J. Gongora, A. L. Adams, S. Benedict, T. J. Kieran and S. R. Isberg. 2015. Extending crocodile genetic selection tools. Rural Industries Research and Development Corporation Publication No. 15/051.

11. Hinton, T. G., D. Coughlin, Y. Yi, T. Glenn, and J. Zimbrick. 2011. Reproductive effects from chronic, multigenerational, low dose rate exposures to radiation. Chapter 19, pages 219-232 in: Mothersill C. E., V. Korogodina, and C. B. Seymour (eds.), Radiobiology and Environmental Security, NATO Science for Peace and Security Series C: Environmental Security, Pp 219-232. DOI 10.1007/978-94-007-1939-2_19, Springer Science+Business Media B.V.

10. Densmore, L. D. III and T. C. Glenn. 2008. 3rd International workshop on crocodylian genetics and genomics. Journal of Experimental Zoology Part A: Ecological Genetics and Physiology 310A(10):569-570.

9. Dueck, L. A., J. A. Fowler, C. S. Hagen, and T. C. Glenn. 2005. Genetic discrimination of Spiranthes cernua species complex in South Carolina. Proceedings of the 2nd International Orchid Conservation Congress, Sarasota, Florida. Selbyana 26(1,2): 145-154.

8. Glenn, T. C. 2002. DNA tools and resources for crocodilian research. P211 In Proceedings of the 16th Working Meeting of the Crocodile Specialist Group of the Species Survival Commission of IUCN – The World Conservation Union, Gland, Switzerland.

7. Oleksyk T.K., M. H. Smith, T. C. Glenn, J. R. Purdue, C. H. Jagoe, and M. W. Smith. 2002. Radioactivity and Genetic Diversity. In Populations of Apodemus flavicollis from Chornobyl, Ukraine. International Radioactivity Conference, Monaco.

6. Jagoe, C. H., A. J. Majeske, T. K. Oleksyk, T. C. Glenn, and M. H. Smith. Radiocesium concentrations and DNA strand breakage in two species of amphibians from the Chornobyl exclusion zone. Proceedings of the International Congress on the Radioecology and Ecotoxicology of Continental and Estuarine Environments, September, 2001, Aix en Provence, France.

5. Oleksyk, T., S. Gashchak, T. Glenn, C. Jagoe, J. Purdue, O. Tsyusko, O. Zalissky, and M. Smith. 2001. Distribution of 137Cs among individuals in fish and mammal populations in Chornobyl. Pp. 431-440. In: V. Glygalo and A. Nosovsky (eds.). Scientific and Technical Aspects of International Cooperation in Chornobyl. Vyscha shkola, Kyiv.

*4. Davis, L. M., T. C. Glenn, R. M. Elsey, I. L. Brisbin Jr., W. E. Rhodes, H. C. Dessauer and R. H. Sawyer. 2001. Genetic structure of six populations of American alligators: A microsatellite analysis. Pages 38-50 In Crocodilian Biology and Evolution, G. C. Grigg, F. Seebacher, and C. E. Franklin (eds.), Surrey Beatty and Sons, Australia.

*3. Glenn, T. C., R. S. Ojerio, W. Stephan, and M. J. Braun. 1997. Microsatellite DNA loci for genetic studies of cranes. pages 36-45 In Proceedings of the 7th North American Crane Workshop. R. P. Urbanek and D.W. Stahlecker, eds. North American Crane Working Group, Grand Island, Nebraska. 262pp.

2. Glenn, T. C. and M. J. Braun. 1992. Toward the elimination of contamination from ancient DNA amplifications: use of 2'-Deoxyuridine-5'-triphosphate and Uracil DNA Glycosylase to eliminate carryover PCR products. Ancient DNA Newsletter. 1(2):28-31.

1. Glenn, T. C. 1991. Animal rights and animal welfare are not equivalent. Conservation Biology 5(4):436-437.

PATENTS

Glenn T.C., K. L. Jones, S. L. Lance, G. J. Szalai, & M. R. Felder. 2008. Source tagging and normalization of DNA for parallel DNA sequencing, and direct measurement of mutation rates using the same. U.S. Patent Filed March 31, 2008. Incorporates Provisional Patents 60/909,010 & 60/909,003 filed March 30, 2007. Patent abandoned June 2010, due to commercial limitations & other time commitments.